rna_table: Data Table of Experimental RNA

In BradyAJohnston/mdfret: Processing and Plotting of MD Data

Data Table of Experimental RNA

Description

Sequences of RNA for MD and FRET experiments. Raw sequences are available, as well as some pre-formatted sequences for use in geom_richtext and kable for both html and LaTeX, that highlight the mismatches between these and the target RNA sequence.

Usage

data(rna_table)

Format

A data frame with columns:

(rna)Numeric value given to RNA, (0 being no RNA) \item(name)Name given to the sequnce, BAJ_01-BAJ_13 and noRNA. \item(latex_name)Name that has escaped underscores "\_" for LaTeX formatting. \item(raw_seq)RNA sequence, 5ʹ to 3ʹ of each RNA. \item(html_seq)Sequences with mismatch to BAJ_01 highilgihted in RED using html flags. Compatible with geom_richtext for labelling. \item(mono_seq)Seqeunces with mismatches to BAJ_01 highlighed in RED and also a monospaced font, using html flags. Compatible with kable(html) for making tables. \item(latex_seq)Sequences with misatch to BAJ_01 highlighed in RED with LaTeX formatting and also a monospaced font. Compatible with kable(latex) for makint tables.

References

Brady Johnston, unpublished work (as of Aug 2020)

Examples

data(grav)
times <- attr(grav, "time")
phe <- grav$pheno
iplotCurves(phe, times)

BradyAJohnston/mdfret documentation built on April 16, 2022, 8:32 a.m.