sp.select: Protein ID Filter

In BrandonMurugan/proteomestats: Utility Functions for Statistical Analysis of Proteomic Data

Protein ID Filter

Description

This function takes a file with protein IDs and returns the 1st sp (SwissProt) identifier. The function will return the 1st tr (trembl) entry if no sp entries are found.

Usage

sp.select(
  input.df,
  ProteinID.column,
  new.ID.column = "ProteinID_main",
  delimiter
)

Arguments

ProteinID.column	Protein ID column to be filtered through to find 1st instance of an sp identifier (string)
new.ID.column	Name of new ID column. Default is ProteinID_main (string)
delimiter	Delimiter within ProteinID.column (string)

Details

The output file is the input file with an additional user defined ProteinID column (Default = ProteinID_main)

Author(s)

Brandon D. Murugan

BrandonMurugan/proteomestats documentation built on May 19, 2024, 8:23 p.m.