BushmanLab/LDppA: Latent Dirichlet Process Prior Allocation for Cell Type Compositions

Cell type compositions are estimated from gene therapy data. The data are in the form of a N by K table of counts for number of cells in each of N cell lineages for which K types are assessed. The model uses a Dirchlet process prior that has a Dirichlet distribution as its base. The K cell types are subject to misclassification and a confusion matrix must be given a priori.

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Package details

AuthorCharles C. Berry [aut, cre]
Maintainer"Charles C. Berry" <cberry@ucsd.edu>
LicenseGPL-3 | file LICENSE
URL https://github.com/BushmanLab/LDppA.git
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
BushmanLab/LDppA documentation built on May 6, 2019, 9:11 a.m.