BushmanLab/cellTypeCompositions: Cell Type Compositions Gibbs Sampler

Estimate cell type compositions from a table of clone by cell type counts. Functions are provided for exploring the cell type compositions that are displayed by cell lineages. The workhorse is a function that performs blocked Gibbs sampling on the cell type frequencies in a parent population under a model that assumes a vague prior for the total number of cells and a uniform Dirichlet prior for the proportions fo different cell types.

install.packages("remotes")
remotes::install_github("BushmanLab/cellTypeCompositions")