featureSet-class: Class 'featureSet' Definition

In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models

Description

Defines an S4 class to represent features,

Slots

seedLen

number of base pairs in the seeding model.

upFootprintExtend

maximum number of upstream positions to be fit beyond the footprint for any feature.

downFootprintExtend

maximum number of downstream positions to be fit beyond the footprint for any feature.

numViews

number of views scored on each DNA strand.

rounds

rounds of SELEX data used to evaluate 'model' to which 'Intercept' belongs.

rcSymmetric

logical: indicating whether reverse complement symmetric model fit should be used.

shapeParamsUsed

list of shape features to be included in 'model'.

N

object of class 'N'

Intercept

object of class 'Intercept'

Shape

object of class 'Shape'

glmFits

List of glm fit summaries.

designMatrixSummary

List of design matrices from getDesignMatrix corresponding to the glmFits.

BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.