Man pages for CBIIT/LDlinkR
Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
| LDexpress | Determine if genomic variants are associated with gene... |
| LDhap | Calculates population specific haplotype frequencies of all... |
| LDlinkR-package | LDlinkR: Calculating Linkage Disequilibrium (LD) in Human... |
| LDmatrix | Generates a data frame of pairwise linkage disequilibrium... |
| LDpair | Investigates potentially correlated alleles for a pair of... |
| LDpop | Investigates allele frequencies and linkage disequilibrium... |
| LDproxy | Explore proxy and putative functional variants for a single... |
| LDproxy_batch | Query LDproxy using a list of query variants, one per line. |
| LDtrait | Determine if genomic variants are associated with a trait or... |
| list_chips | Provides a data frame listing the names and abbreviation... |
| list_gtex_tissues | Provides a data frame listing the GTEx full names,... |
| list_pop | Provides a data frame listing the available reference... |
| SNPchip | Find commercial genotyping chip arrays for variants of... |
| SNPclip | Prune a list of variants by linkage disequilibrium. |
