Files in CBIIT/rcellminerElasticNet
rcellminerElasticNet
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/addPredictorCorrelatedFeatures.R
R/cvElasticNet.R
R/elasticNet.R
R/genFeatureAnnotations.R
R/getCvFoldIds.R
R/getFdaClinicalTrialNscs.R
R/getLmCvFit.R
R/multiTaskElasticNet.R
R/plotElasticNet.R
R/predictWithLinRegModel.R
R/searchListOfVectors.R
R/selectElasticNetParams.R
R/summary.enResults.R
R/tic_toc.R
R/xValFolds.R
README.md
inst/analyses/enCvExps.R
inst/analyses/enMemUsage.R
inst/analyses/makeDrugLists.R
inst/analyses/makeEnResultsHeatmap_DEPRECATED.R
inst/brew/ElasticNetBatchAnalysisBasic_DEPRECATED.Rmd
inst/brew/ElasticNetBatchAnalysisProtein_DEPRECATED.R
inst/brew/ElasticNetBatchAnalysis_DEPRECATED.R
inst/brew/ElasticNetBatchAnalysis_DEPRECATED.Rmd
inst/brew/RunEnAnalysisBasicReport.R
inst/brew/findUnfinished.R
inst/brew/genEnAnalysisBasicReport.R
inst/brew/genSwarmCmd.R
inst/brew/getCommonFeatures.R
inst/brew/templateBasicBrew.Rmd
inst/brew/templateElasticNetBatchAnalysisBasicBrew.Rmd
inst/config/commonFeaturesEn/commonFeatures.txt
inst/config/commonFeaturesEn/config.json
inst/config/commonFeaturesEn/runSwarm.sh
inst/config/fdaClin/config.json
inst/config/fdaClin/runSwarm.sh
inst/config/test/config.json
inst/config/test/runMultipleDrugs.R
inst/config/test/runSwarm.sh
inst/extdata/.Rapp.history
inst/extdata/RunGenOutput.R
inst/extdata/annot_table_cf.html
inst/extdata/annot_table_ct.html
inst/extdata/common_en_annot_table.txt
inst/extdata/common_en_cvresults_cvCorMat.rds
inst/extdata/common_en_cvresults_heatmap.pdf
inst/extdata/common_en_cvresults_heatmap.txt
inst/extdata/common_en_cvresults_table.rds
inst/extdata/common_en_cvresults_table.txt
inst/extdata/common_en_cvresults_vioplot.pdf
inst/extdata/enDrugInfo.txt
inst/extdata/en_annot_table.txt
inst/extdata/en_cvresults_cvCorMat.rds
inst/extdata/en_cvresults_heatmap.pdf
inst/extdata/en_cvresults_heatmap.txt
inst/extdata/en_cvresults_table.rds
inst/extdata/en_cvresults_table.txt
inst/extdata/en_cvresults_vioplot.pdf
inst/extdata/heatmap_cf_pf.html
inst/extdata/heatmap_cf_pt.html
inst/extdata/heatmap_ct_pf.html
inst/extdata/heatmap_ct_pt.html
inst/extdata/partial_common_en_cvresults_heatmap.pdf
inst/extdata/partial_common_en_cvresults_heatmap.txt
inst/extdata/partial_en_cvresults_heatmap.pdf
inst/extdata/partial_en_cvresults_heatmap.txt
inst/extdata/table_cf.html
inst/extdata/table_ct.html
inst/scripts/plotSpecificEnResult.R
inst/tests/test_elasticNet.R
man/addPredictorCorrelatedFeatures.Rd
man/cvElasticNet.Rd
man/elasticNet.Rd
man/genFeatureAnnotations.Rd
man/getCvFoldIds.Rd
man/getFdaClinicalTrialNscs.Rd
man/getLmCvFit.Rd
man/multiTaskElasticNet.Rd
man/plotElasticNet.Rd
man/predictWithLinRegModel.Rd
man/searchListOfVectors.Rd
man/selectElasticNetParams.Rd
man/summary.enResults.Rd
man/tic.Rd
man/toc.Rd
man/xValFolds.Rd
rcellminerElasticNet.Rproj
vignettes/checkEnData.Rmd
vignettes/makeEnResultsHeatmap.Rmd
vignettes/makeEnResultsTable.Rmd
vignettes/makePredictorAnnotTable.Rmd
