Man pages for CFeregrino/scWGCNA
WGCNA Analyses on Single-cell Data
| calculate.pseudocells | Calculates pseudocells from a Seurat object |
| choose.sfttp | Chooses a soft-tresholding power |
| MmLimbE155.scWGCNA | A pre-computed scWGCNA list calculated from the Mouse limb... |
| MmvGg.comparative | A pre-computed comparative scWGCNA list calculated from the... |
| my.small_GgLimbHH29 | A pre-analyzed, sub-sampled Seurat object, of single cell... |
| my.small_MmLimbE155 | A pre-analyzed, sub-sampled Seurat object, of single cell... |
| run.scWGCNA | Runs a semi-automatic, iterative scWGCNA analysis |
| scW.eigen | Calculates module eigengenes, average expression, membership... |
| scWGCNA.networks | Calculates the graphic networks of scWGCNA data |
| scWGNA.compare | Runs a comparative scWGCNA analysis |
| scW.p.dendro | Plots the gene / module WGCNA tree, or trees |
| scW.p.expression | Plots mean expression of the modules on the single cell data. |
| scW.p.modulefrac | Plots a barplot with the fraction of the expressed and... |
| scW.p.network | Plots a fruchtermanreingold network of the co-expression... |
| scW.p.preservation | Plots dotplot showing the z-score values for preservation and... |
