scW.eigen: Calculates module eigengenes, average expression, membership...

In CFeregrino/scWGCNA: WGCNA Analyses on Single-cell Data

Calculates module eigengenes, average expression, membership and p.values from different sc data.

Description

This function calculates module eigengenes, average expression, membership and p.values, from a Seurat object, using as reference a set of gene modules.

Usage

scW.eigen(modules, seurat)

Arguments

modules	scWGCNA.data or named vector. An scWGCNA.data object, as calculated by run.scWGCNA().
seurat	a Seurat object, which has THE SAME gene names as the ones provided in the modules argument.

Value

A list with different data

Examples

#  We can calculate the eigengenes taking the expression of the single cells
eigengenes.sc = scW.eigen(modules = MmLimbE155.scWGCNA, seurat = my.small_MmLimbE155)

CFeregrino/scWGCNA documentation built on Nov. 21, 2022, 2:31 a.m.