topologyCheck: Compare trees to clade structure

Description Usage Arguments Details Value

View source: R/TreeTopologyChecker.R

Description

Identifies trees discordant with a tree topology

Usage

1
topologyCheck(trees, cladeStr)

Arguments

trees

multiphy or list of phy. Trees to test for clade structure specified in cladeStr

cladeStr

data.frame. Clade structure of the tree.

Details

checks a all trees for a provided clade structure

Value

list of trees in phy format containing all discordant trees.


CMWbio/weavR documentation built on March 19, 2018, 4:07 a.m.