inst/markdown/germline_gwas.markdown
In CRI-iAtlas/iatlas-app: What the Package Does (One Line, Title Case)
GWAS were performed on 33 immune traits that demonstrated nominally significant heritability (p < 0.05) in at least one ancestry group. Here you can visualize the significant (p < 10 -6 ) GWAS hits, as a Manhattan plot.
Choose Immune Feature(s) of interest to select or exclude the GWAS hits associated with trait(s). You can add multiple GWAS tracks, with different selection of immune features, or leave the Choose Immune Feature(s) field empty and visualize all available results.
More information on a particular SNP, including links to external resources, can be obtained by clicking on the Manhattan plot, or by searching on the dropdown menu on the right.
Manuscript context: For an image similar to Figure 4A, choose "Select" in the Select or Exclude? menu, select immune feature “IFN 21978456”, and hit Add GWAS Track. Use the IGV navigation bar to select the region of interest.
CRI-iAtlas/iatlas-app documentation built on Feb. 7, 2025, 9:02 p.m.
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GWAS were performed on 33 immune traits that demonstrated nominally significant heritability (p < 0.05) in at least one ancestry group. Here you can visualize the significant (p < 10 -6 ) GWAS hits, as a Manhattan plot.
Choose Immune Feature(s) of interest to select or exclude the GWAS hits associated with trait(s). You can add multiple GWAS tracks, with different selection of immune features, or leave the Choose Immune Feature(s) field empty and visualize all available results.
More information on a particular SNP, including links to external resources, can be obtained by clicking on the Manhattan plot, or by searching on the dropdown menu on the right.
Manuscript context: For an image similar to Figure 4A, choose "Select" in the Select or Exclude? menu, select immune feature “IFN 21978456”, and hit Add GWAS Track. Use the IGV navigation bar to select the region of interest.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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