inst/markdown/methods/neoantigen-frequency.markdown
In CRI-iAtlas/iatlas-app: What the Package Does (One Line, Title Case)
Title: Neoantigen - Frequency of peptide-MHC combinations
Description:
Neoantigen prediction was performed using the Landscape of Effective Neoantigens Software (LENS) workflow (Vensko 2023).
We listed the 1% most common combinations of peptide-MHC (pMHC) across datasets, and collected all occurrences of them. The known genes from which the most frequent pMHCs in the population are derived are included.
Several of the frequently observed pMHCs are result of different number of mutations. We computed how many mutations events, per patient, resulted in the pMHCs. We used this count and the number of patients who carry a given pMHC to generate the scatterplot.
Contributors: Steven P Vensko II, Dante Bortone, Carolina Heimann
CRI-iAtlas/iatlas-app documentation built on Feb. 7, 2025, 9:02 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Title: Neoantigen - Frequency of peptide-MHC combinations
Description: Neoantigen prediction was performed using the Landscape of Effective Neoantigens Software (LENS) workflow (Vensko 2023). We listed the 1% most common combinations of peptide-MHC (pMHC) across datasets, and collected all occurrences of them. The known genes from which the most frequent pMHCs in the population are derived are included.
Several of the frequently observed pMHCs are result of different number of mutations. We computed how many mutations events, per patient, resulted in the pMHCs. We used this count and the number of patients who carry a given pMHC to generate the scatterplot.
Contributors: Steven P Vensko II, Dante Bortone, Carolina Heimann
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.