inst/markdown/methods/sc-pseudobulk-scoring.md
In CRI-iAtlas/iatlas-app: What the Package Does (One Line, Title Case)
Title: Geneset Scoring of Pseudobulk single-cell RNA-seq data
Description:
Pseudobulk: Pseudobulk was computed from normalized and log-transformed data, using the get_pseudobulk function from the decoupler python library (Badia-i-Mompel et al, 2022), with mode set to "sum".
Pseudobulk Geneset Enrichment Analysis: The results from pseudobulk were used for GeneSet Enrichment Analysis (Subramanian, 2003). Scores were computed using the run_gsea function from the decoupler python library (Badia-i-Mompel et al, 2022).
Contributors: Carolina Heimann, Clarisse Lau, David Gibbs, Vésteinn Thorsson
CRI-iAtlas/iatlas-app documentation built on Feb. 7, 2025, 9:02 p.m.
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Title: Geneset Scoring of Pseudobulk single-cell RNA-seq data
Description:
Pseudobulk: Pseudobulk was computed from normalized and log-transformed data, using the get_pseudobulk function from the decoupler python library (Badia-i-Mompel et al, 2022), with mode set to "sum".
Pseudobulk Geneset Enrichment Analysis: The results from pseudobulk were used for GeneSet Enrichment Analysis (Subramanian, 2003). Scores were computed using the run_gsea function from the decoupler python library (Badia-i-Mompel et al, 2022).
Contributors: Carolina Heimann, Clarisse Lau, David Gibbs, Vésteinn Thorsson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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