heatmap_server: Heatmap Server
In CRI-iAtlas/iatlas.modules: iAatlas Modules

heatmap_server

R Documentation

Heatmap Server

Description

Heatmap Server

Usage

heatmap_server(
  id,
  feature_sample_data_function,
  response_sample_data_function,
  feature_data,
  response_data,
  group_data,
  summarise_function_list = shiny::reactive(stats::cor),
  drilldown = shiny::reactive(F),
  default_response = shiny::reactive(NULL),
  default_class = shiny::reactive(NULL),
  mock_event_data = shiny::reactive(NULL),
  ...
)

Arguments

`id`	Module ID
`feature_sample_data_function`	A shiny::reactive that returns a function The function must take an argument called ".feature_class" and return a dataframe with columns "sample_name", "group_name", "dataset_name", "feature_name", and "feature_value"
`response_sample_data_function`	A shiny::reactive that returns a function The function must take an argument called ".feature" and return a dataframe with columns "sample_name", "feature_name", "feature_value"
`feature_data`	A shiny::reactive that returns a dataframe with columns "feature_name","feature_display", "feature_class", and "feature_order". Each value in the "feature_name" column should only appear once.
`response_data`	A shiny::reactive that returns a dataframe with columns "feature_name","feature_display", and optionally "feature_class. Each value in the "feature_name" column should only appear once.
`group_data`	A shiny::reactive that returns a dataframe with columns "group_name", "group_display", and optionally "group_description" and "group_color". Each value in the "group_name"column should only appear once.
`summarise_function_list`	A shiny::reactive that returns a either a function or a named list of functions. If a list is passed, it will be passed to shiny::selectInput. Each function must take vectors. The first one will be the "feature_value" column of feature_data_function, and the second will be the "feature_value" of repsonse_data_function. Each function must return one numeric value.
`drilldown`	A shiny::reactive that returns True or False
`default_response`	A shiny::reactive that returns a string that is one of the values in the response_data feature_name column
`default_class`	A shiny::reactive that returns a string that is one of the values in the feature_data feature_class column
`mock_event_data`	A shiny::reactive that returns a dataframe. For testing purposes only. Must have columns "curveNumber", "pointNumber", "x", "y", and "z". The "x" column corresponds to the group selected, and the "y" column corresponds to feature selected.
`...`	arguments sent to plotly_scatter