Files in CVPIA-OSC/EMLaide
Provides functions for building EML metadata for EDI's data repository
.Rbuildignore
.gitignore
DESCRIPTION
EMLaide.Rproj
LICENSE.md
NAMESPACE
R/abstract-element.R
R/access-element.R
R/api-functions.R
R/attribute-element.R
R/coverage-element.R
R/data-table-element.R
R/data.R
R/funding-element.R
R/intellectual-rights-element.R
R/keyword-set-element.R
R/maintenance-element.R
R/methods-element.R
R/other-entity-element.R
R/personnel-element.R
R/physical-element.R
R/project-element.R
R/publication-date-element.R
R/raster-element.R
R/taxonomic-coverage-element.R
R/title-element.R
R/utils-pipe.R
R/word-example-helper.R
README.md
_pkgdown.yml
data-raw/Hannon-Example/20200609 EDI_metadata_template Sac Monitoring - snorkel.docx
data-raw/Hannon-Example/abstract.md
data-raw/Hannon-Example/enclosure-study-growth-rate-data.csv
data-raw/Hannon-Example/enclosure-study-growth-rates-metadata.xlsx
data-raw/Hannon-Example/enclosure-study-gut-contents-data.csv
data-raw/Hannon-Example/enclosure-study-gut-contents-metadata.xlsx
data-raw/Hannon-Example/example-metadata.xlsx
data-raw/Hannon-Example/hannon_example_abstract.docx
data-raw/Hannon-Example/hannon_example_methods.docx
data-raw/Hannon-Example/hannon_example_physical_data.csv
data-raw/Hannon-Example/hannon_example_physical_data.xlsx
data-raw/Hannon-Example/make_eml.R
data-raw/Lowry et al 2013/.DS_Store
data-raw/Lowry et al 2013/Lowry et al 2013.Rproj
data-raw/Lowry et al 2013/Lowry_et_al_2013.docx
data-raw/Lowry et al 2013/abstract.txt
data-raw/Lowry et al 2013/additional_info.txt
data-raw/Lowry et al 2013/all-database-records.csv
data-raw/Lowry et al 2013/attributes_all-database-records.txt
data-raw/Lowry et al 2013/attributes_papers-in-the-field-synopsis.txt
data-raw/Lowry et al 2013/attributes_papers-in-the-systematic-review.txt
data-raw/Lowry et al 2013/catvars_all-database-records.txt
data-raw/Lowry et al 2013/catvars_papers-in-the-field-synopsis.txt
data-raw/Lowry et al 2013/catvars_papers-in-the-systematic-review.txt
data-raw/Lowry et al 2013/custom_units.txt
data-raw/Lowry et al 2013/edi.540.1.xml
data-raw/Lowry et al 2013/intellectual_rights.txt
data-raw/Lowry et al 2013/keywords.txt
data-raw/Lowry et al 2013/makeEML.R
data-raw/Lowry et al 2013/methods.txt
data-raw/Lowry et al 2013/old_data/abstract.txt
data-raw/Lowry et al 2013/old_data/additional_info.txt
data-raw/Lowry et al 2013/old_data/attributes_all-database-records.txt
data-raw/Lowry et al 2013/old_data/attributes_papers-in-the-field-synopsis.txt
data-raw/Lowry et al 2013/old_data/attributes_papers-in-the-systematic-review.txt
data-raw/Lowry et al 2013/old_data/catvars_all-database-records.txt
data-raw/Lowry et al 2013/old_data/catvars_papers-in-the-field-synopsis.txt
data-raw/Lowry et al 2013/old_data/catvars_papers-in-the-systematic-review.txt
data-raw/Lowry et al 2013/old_data/intellectual_rights.txt
data-raw/Lowry et al 2013/old_data/keywords.txt
data-raw/Lowry et al 2013/old_data/methods.txt
data-raw/Lowry et al 2013/old_data/personnel.txt
data-raw/Lowry et al 2013/papers-in-the-field-synopsis.csv
data-raw/Lowry et al 2013/papers-in-the-systematic-review.csv
data-raw/Lowry et al 2013/personnel.txt
data-raw/Lowry et al 2013/taxon.csv
data-raw/Lowry et al 2013/taxonomic_coverage.txt
data-raw/cache-data.R
data-raw/manual_testing_materials/edi.1046.1.xml
data-raw/manual_testing_materials/test_eml_generation_and_api_functions.R
data-raw/metadata_template/Metadata Template Documentation.pdf
data-raw/metadata_template/abstract.docx
data-raw/metadata_template/datatable-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/data/enclosure-study-growth-rate-data.csv
data-raw/metadata_template/metadata example/Banet-Example/data/enclosure-study-gut-contents-data.csv
data-raw/metadata_template/metadata example/Banet-Example/data/microhabitat-use-data-2018-2020.csv
data-raw/metadata_template/metadata example/Banet-Example/data/seining-weight-lengths-2018-2020.csv
data-raw/metadata_template/metadata example/Banet-Example/data/snorkel-index-data-2015-2020.csv
data-raw/metadata_template/metadata example/Banet-Example/metadata/abstract.docx
data-raw/metadata_template/metadata example/Banet-Example/metadata/data-package-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/metadata/enclosure-study-growth-rates-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/metadata/enclosure-study-gut-contents-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/metadata/methods.docx
data-raw/metadata_template/metadata example/Banet-Example/metadata/microhabitat-use-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/metadata/seining-weight-length-metadata.xlsx
data-raw/metadata_template/metadata example/Banet-Example/metadata/snorkel-index-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/data/enclosure-study-growth-rate-data.csv
data-raw/metadata_template/metadata-example/Banet-Example/data/enclosure-study-gut-contents-data.csv
data-raw/metadata_template/metadata-example/Banet-Example/data/microhabitat-use-data-2018-2020.csv
data-raw/metadata_template/metadata-example/Banet-Example/data/seining-weight-lengths-2018-2020.csv
data-raw/metadata_template/metadata-example/Banet-Example/data/snorkel-index-data-2015-2020.csv
data-raw/metadata_template/metadata-example/Banet-Example/metadata/abstract.docx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/enclosure-study-growth-rates-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/enclosure-study-gut-contents-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/methods.docx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/microhabitat-use-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/project-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/seining-weight-length-metadata.xlsx
data-raw/metadata_template/metadata-example/Banet-Example/metadata/snorkel-index-metadata.xlsx
data-raw/metadata_template/metadata.xlsx
data-raw/metadata_template/methods.docx
data-raw/metadata_template/project-metadata.xlsx
data/.DS_Store
data/CVPIA_common_species.rda
data/CVPIA_funders.rda
data/measurement_scale.rda
data/number_type.rda
data/standard_units.rda
data/storage_type.rda
docs/404.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
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docs/articles/EML-multiple-datasets.html
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docs/articles/origional-vignettes/Dataset-Element.html
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docs/articles/origional-vignettes/Inital-Metadata-Information.html
docs/articles/origional-vignettes/Inital-Metadata-Information_files/header-attrs-2.6/header-attrs.js
docs/articles/origional-vignettes/creating-EML.html
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docs/articles/origional-vignettes/custom-units.html
docs/articles/origional-vignettes/custom-units_files/header-attrs-2.6/header-attrs.js
docs/articles/template-doc.html
docs/articles/template-doc_files/header-attrs-2.11/header-attrs.js
docs/articles/template-doc_files/header-attrs-2.6/header-attrs.js
docs/articles/template-doc_files/header-attrs-2.8/header-attrs.js
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docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CVPIA_common_species.html
docs/reference/CVPIA_funders.html
docs/reference/Rplot001.png
docs/reference/add_abstract.html
docs/reference/add_access.html
docs/reference/add_attribute.html
docs/reference/add_coverage.html
docs/reference/add_data_table.html
docs/reference/add_datatable.html
docs/reference/add_datetime.html
docs/reference/add_funding.html
docs/reference/add_interval_ratio.html
docs/reference/add_keyword_set.html
docs/reference/add_license.html
docs/reference/add_maintenance.html
docs/reference/add_method.html
docs/reference/add_nominal.html
docs/reference/add_ordinal.html
docs/reference/add_other_entity.html
docs/reference/add_personnel.html
docs/reference/add_physical.html
docs/reference/add_project.html
docs/reference/add_pub_date.html
docs/reference/add_raster.html
docs/reference/add_taxonomic_coverage.html
docs/reference/add_title.html
docs/reference/attributes_and_codes.html
docs/reference/code_helper.html
docs/reference/create_abstract.html
docs/reference/create_attribute.html
docs/reference/create_coverage.html
docs/reference/create_datatable.html
docs/reference/create_datetime.html
docs/reference/create_funding.html
docs/reference/create_interval_ratio.html
docs/reference/create_keyword_set.html
docs/reference/create_license.html
docs/reference/create_maintenance.html
docs/reference/create_method.html
docs/reference/create_nominal.html
docs/reference/create_ordinal.html
docs/reference/create_other_entity.html
docs/reference/create_person.html
docs/reference/create_physical.html
docs/reference/create_project.html
docs/reference/create_pub_date.html
docs/reference/create_raster.html
docs/reference/create_taxonomic_coverage.html
docs/reference/create_title.html
docs/reference/evaluate_edi_package.html
docs/reference/figures/apple-touch-icon-120x120.png
docs/reference/figures/apple-touch-icon-60x60.png
docs/reference/figures/apple-touch-icon-76x76.png
docs/reference/figures/apple-touch-icon.png
docs/reference/figures/emlaide-hex.png
docs/reference/figures/favicon-16x16.png
docs/reference/figures/favicon-32x32.png
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docs/reference/figures/hex_logo_old.png
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docs/reference/generate_report_df.html
docs/reference/index.html
docs/reference/measurement_scale.html
docs/reference/number_type.html
docs/reference/pipe.html
docs/reference/reorder_attributes_helper.html
docs/reference/reserve_edi_id.html
docs/reference/standard_units.html
docs/reference/storage_type.html
docs/reference/update_edi_package.html
docs/reference/upload_edi_package.html
docs/reference/word_example.html
docs/sitemap.xml
inst/extdata/Banet-Example/data/enclosure-study-growth-rate-data.csv
inst/extdata/Banet-Example/data/enclosure-study-gut-contents-data.csv
inst/extdata/Banet-Example/data/microhabitat-use-data-2018-2020.csv
inst/extdata/Banet-Example/data/seining-weight-lengths-2018-2020.csv
inst/extdata/Banet-Example/data/snorkel-index-data-2015-2020.csv
inst/extdata/Banet-Example/metadata/abstract.docx
inst/extdata/Banet-Example/metadata/data-package-metadata.xlsx
inst/extdata/Banet-Example/metadata/enclosure-study-growth-rates-metadata.xlsx
inst/extdata/Banet-Example/metadata/enclosure-study-gut-contents-metadata.xlsx
inst/extdata/Banet-Example/metadata/methods.docx
inst/extdata/Banet-Example/metadata/microhabitat-use-metadata.xlsx
inst/extdata/Banet-Example/metadata/seining-weight-length-metadata.xlsx
inst/extdata/Banet-Example/metadata/snorkel-index-metadata.xlsx
inst/extdata/Hannon-Example/snorkel-index-example-abstract.docx
inst/extdata/Hannon-Example/snorkel-index-example-data.csv
inst/extdata/Hannon-Example/snorkel-index-example-metadata.xlsx
inst/extdata/Hannon-Example/snorkel-index-example-methods.docx
inst/extdata/abstract_template.docx
inst/extdata/methods-template.docx
inst/extdata/multi-dataset-example/enclosure-study-example-abstract.docx
inst/extdata/multi-dataset-example/enclosure-study-example-methods.docx
inst/extdata/multi-dataset-example/enclosure-study-growth-rate-data.csv
inst/extdata/multi-dataset-example/enclosure-study-growth-rate-data.xlsx
inst/extdata/multi-dataset-example/enclosure-study-growth-rates-metadata.xlsx
inst/extdata/multi-dataset-example/enclosure-study-gut-contents-data.csv
inst/extdata/multi-dataset-example/enclosure-study-gut-contents-data.xlsx
inst/extdata/multi-dataset-example/enclosure-study-gut-contents-metadata.xlsx
man/CVPIA_common_species.Rd
man/CVPIA_funders.Rd
man/add_abstract.Rd
man/add_access.Rd
man/add_coverage.Rd
man/add_datatable.Rd
man/add_keyword_set.Rd
man/add_license.Rd
man/add_maintenance.Rd
man/add_method.Rd
man/add_other_entity.Rd
man/add_personnel.Rd
man/add_project.Rd
man/add_pub_date.Rd
man/add_raster.Rd
man/add_taxonomic_coverage.Rd
man/add_title.Rd
man/code_helper.Rd
man/create_abstract.Rd
man/create_attribute.Rd
man/create_coverage.Rd
man/create_datatable.Rd
man/create_datetime.Rd
man/create_funding.Rd
man/create_interval_ratio.Rd
man/create_keyword_set.Rd
man/create_license.Rd
man/create_maintenance.Rd
man/create_method.Rd
man/create_nominal.Rd
man/create_ordinal.Rd
man/create_other_entity.Rd
man/create_person.Rd
man/create_physical.Rd
man/create_project.Rd
man/create_pub_date.Rd
man/create_raster.Rd
man/create_taxonomic_coverage.Rd
man/create_title.Rd
man/evaluate_edi_package.Rd
man/figures/apple-touch-icon-120x120.png
man/figures/apple-touch-icon-60x60.png
man/figures/apple-touch-icon-76x76.png
man/figures/apple-touch-icon.png
man/figures/emlaide-hex.png
man/figures/favicon-16x16.png
man/figures/favicon-32x32.png
man/figures/favicon.ico
man/figures/hex_logo.png
man/figures/hex_logo_old.png
man/figures/logo.png
man/generate_report_df.Rd
man/measurement_scale.Rd
man/number_type.Rd
man/pipe.Rd
man/reorder_attributes_helper.Rd
man/reserve_edi_id.Rd
man/standard_units.Rd
man/storage_type.Rd
man/update_edi_package.Rd
man/upload_edi_package.Rd
man/word_example.Rd
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
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pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/.DS_Store
tests/.gitignore
tests/fixtures/evaluate_eml_error.yml
tests/fixtures/reserve_edi_id_errors.yml
tests/fixtures/reserve_edi_id_responses.yml
tests/testthat.R
tests/testthat/abstract_test.docx
tests/testthat/edi.678.1.xml
tests/testthat/methods_test.docx
tests/testthat/setup-EMLaide.R
tests/testthat/test-api.R
tests/testthat/test-coverage-elements.R
tests/testthat/test-data-table-elements.R
tests/testthat/test-eml-elements.R
tests/testthat/test-project-elements.R
tests/testthat/test-raster-data-elements.R
tests/testthat/test_data.csv
tests/testthat/tests-add-functions.R
vignettes/.gitignore
vignettes/create-EML-from-template.Rmd
vignettes/template-doc.Rmd
vignettes/update-data-package.Rmd
