Man pages for Caetanods/buddPhy
Trait Evolution and Budding Speciation
| drop_fossils_track_node | Drop fossil tips and record matching nodes |
| get_Budding_History | Extract budding history from simulations |
| make_phylip_data | Creates BioGeoBEARS phylip file |
| make_scaler_simmap | Make stochastic map with rate scalers |
| mcmc_mk_budd_exp | Bayesian estimation of discrete trait evolution with budding... |
| optim_base_rate | Adjust average rate under budding speciation |
| plot_cont_sim | Plot trajectory of continuous trait simulation |
| plot_mother_lineages | Plot phylogeny and show mother lineages |
| sim_BM_budding_exp | Simulate continuous trait evolution with budding and... |
| sim_BM_trace_history | Simulate continuous trait evolution tracing lineage history. |
| sim_Mk_budding_exp | Simulate discrete trait evolution with budding and... |
| sim_Mk_trace_history | Simulate discrete trait evolution tracing lineage history. |
| simulate_rate_decay | Simulate the expected amount of trait evolution under... |
| tree_rescale_exp | Rescale branch lengths following the model |
