BronCell.prop: main function of this package, to calculate cell proportion
In CancanQi/BronchiCellPred: BronchiCellPred
Description
Usage
Arguments
Value
Description
main function of this package, to calculate cell proportion
Usage
1
BronCell.prop(bulk.eset, method = "MuSiC")
Arguments
bulk.eset
ExpressionSet for bulk data, raw counts as the input
method
Three deconvolution methods are provided: MuSiC, NNLS and bseqsc (based on CIBERSORT), MuSiC is the defual method
Value
est.prop, A cell proportion matrix, each row represent a sample, each col is a cell type
CancanQi/BronchiCellPred documentation built on Dec. 17, 2021, 1:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
main function of this package, to calculate cell proportion
Usage
1 | BronCell.prop(bulk.eset, method = "MuSiC")
|
Arguments
bulk.eset |
ExpressionSet for bulk data, raw counts as the input |
method |
Three deconvolution methods are provided: MuSiC, NNLS and bseqsc (based on CIBERSORT), MuSiC is the defual method |
Value
est.prop, A cell proportion matrix, each row represent a sample, each col is a cell type
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.