annotate_child_nebulae: annotate_child_nebulae

In Cao-lab-zcmu/MCnebula: MCnebula algorithm integration in R

annotate_child_nebulae

Description

Visualization of structure, PPCP and statistic data in child-nebula.

Usage

annotate_child_nebulae(
  nebula_name,
  compound_class_list = .MCn.nebula_class,
  write_output = T,
  output = paste0(.MCn.output, "/", .MCn.results),
  layout = "fr",
  height = "auto",
  width = "auto",
  plot_nodes_id = T,
  plot_structure = T,
  plot_ppcp = T,
  ratio_df = NA,
  merge_image = T,
  return_plot = F,
  nodes_mark = NA,
  global.node.size = 0.6,
  theme_args = NA,
  ...
)

Arguments

nebula_name	Character. The name of child-nebula.
compound_class_list	A list, generaged by collate_ppcp, Default: .MCn.nebula_class
write_output	Logic. Write output to a directory, Default: T
output	Character, Default: paste0(.MCn.output, "/", .MCn.results)
layout	Character, 'igraph' layout, Default: 'fr'
height	A number, Default: 'auto'
width	A number, Default: 'auto'
plot_nodes_id	Logic, Default: T
plot_structure	Logic, Default: T
plot_ppcp	Logic, Default: T
ratio_df	A data.frame, Default: NA
merge_image	Logic, Default: T
return_plot	Logic, Default: F
nodes_mark	A is.data.frame, Default: NA
global.node.size	A number, Default: 0.6
theme_args	A list, Default: NA
...	...

Details

DETAILS

See Also

filter, select, rename, mutate rbindlist

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

Cao-lab-zcmu/MCnebula documentation built on March 27, 2023, 3:53 p.m.