Man pages for Carldeboer/BrockmanR
K-mer-based analysis of chromatin state.
| bestMotifPerTF | Take best motif per TF |
| cisbp | Conversion of the CIS-BP motif database to k-mer space. |
| doKMerPCA | k-mer PCA+tSNE |
| dropSimilarMotifs | Drop any motifs that appear to be redundant |
| findDistinguishingPCs | Find distinguishing PCs |
| getKMerTFEnrichment | Get TF motif enrichment for given gkm-PCs |
| inputKMerFreqs | Inputs k-mer frequencies |
| makeEnrichmentGraph | Makes an enrichment graph for a sorted binary vector |
| makeEnrichmentGraphForPC | Make a graph showing enrichment of a motif within a PC |
| minHG | Do a minimum hyper-geometric test |
| preferDirect | Take directly determined motifs where available |
