Man pages for Carldeboer/MAUDE
Mean Alterations Using Discrete Expression
| calcFDRByExperiment | FDR correction per experiment |
| combineZStouffer | Combines Z-scores using Stouffer's method |
| findGuideHits | Calculate guide-level statistics for a single screen |
| findGuideHitsAllScreens | Calculate guide-level stats for multiple experiments |
| findOverlappingElements | Find overlaps between guides and annotated elements |
| getElementwiseStats | Find active elements by annotation |
| getNBGaussianLikelihood | Calculate the log likelihood of observed read counts |
| getTilingElementwiseStats | Find active elements by sliding window |
| getZScalesWithNTGuides | Calculate Z-score scaling factors using non-targeting guides |
| makeBinModel | Create a bin model for a single experiment |
