Files in CasedUgr/KnowSeq
KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
NAMESPACE
NEWS
R/DEGsEvidences.R
R/DEGsExtraction.R
R/DEGsToDiseases.R
R/DEGsToPathways.R
R/RNAseqQA.R
R/batchEffectRemoval.R
R/calculateGeneExpressionValues.R
R/countsToMatrix.R
R/dataPlot.R
R/downloadPublicSeries.R
R/featureSelection.R
R/fileMove.R
R/gdcClientDownload.R
R/geneOntologyEnrichment.R
R/getGenesAnnotation.R
R/hisatAlignment.R
R/knn_test.R
R/knn_trn.R
R/knowseqReport.R
R/plotConfMatrix.R
R/rawAlignment.R
R/rf_test.R
R/rf_trn.R
R/sraToFastq.R
R/svm_test.R
R/svm_trn.R
README.md
Supplementary Scripts/UpdateGenesFile.R
Supplementary Scripts/UpdateKEGGFile.R
inst/CITATION
inst/extdata/GRCh38Annotation.csv
inst/extdata/GSE74251.csv
inst/extdata/GSE81593.csv
inst/extdata/Genes_length_Homo_Sapiens.csv
inst/extdata/KEGGPathsDB.csv
inst/extdata/countFiles/SRR2753159/SRR2753159.count
inst/extdata/countFiles/SRR2753160/SRR2753160.count
inst/extdata/countFiles/SRR2753161/SRR2753161.count
inst/extdata/countFiles/SRR2753162/SRR2753162.count
inst/extdata/countFiles/SRR2753163/SRR2753163.count
inst/extdata/countFiles/SRR3541296/SRR3541296.count
inst/extdata/countFiles/SRR3541297/SRR3541297.count
inst/extdata/countFiles/SRR3541298/SRR3541298.count
inst/extdata/countFiles/SRR3541299/SRR3541299.count
inst/extdata/countFiles/SRR3541300/SRR3541300.count
inst/extdata/countFiles/mergedCountsInfo.csv
inst/extdata/expressionExample.RData
inst/extdata/report_style.css
inst/script/KnowSeqExample.R
logoKnow.png
man/DEGsEvidences.Rd
man/DEGsExtraction.Rd
man/DEGsToDiseases.Rd
man/DEGsToPathways.Rd
man/RNAseqQA.Rd
man/batchEffectRemoval.Rd
man/calculateGeneExpressionValues.Rd
man/countsToMatrix.Rd
man/dataPlot.Rd
man/downloadPublicSeries.Rd
man/featureSelection.Rd
man/fileMove.Rd
man/gdcClientDownload.Rd
man/geneOntologyEnrichment.Rd
man/getGenesAnnotation.Rd
man/hisatAlignment.Rd
man/knn_test.Rd
man/knn_trn.Rd
man/knowseqReport.Rd
man/plotConfMatrix.Rd
man/rawAlignment.Rd
man/rf_test.Rd
man/rf_trn.Rd
man/sraToFastq.Rd
man/svm_test.Rd
man/svm_trn.Rd
vignettes/GOExample.png
vignettes/KnowSeq.Rmd
vignettes/KnowSeqPipeline.png
vignettes/arrayexpress.png
vignettes/diseaseKRT19.png
vignettes/gdc.png
vignettes/ncbi.png
vignettes/vignette_style.css
