getVg: getVg

In Catalysta/vgdat: GTEx v.7 variance data

Description

Function looks up the variance estimates from VG_GTEx_v7 data for a vector of ENS IDs

Usage

getVg(Vg, colname = "IDs", tissue = "MSCLSK", ENS_id)

Arguments

Vg	a data frame containing the population variance estimates (default is VG_GTEx_v7.rda.
colname	a string for the name of the column in the Vg file containing ENS IDs (these will be used to look up the desired variance estimate).
tissue	the column name in Vg from which the variance estimates should be obtained. Here we default to MSCLSK.
ENS_id	vector containing user's list of ENS IDs for which variance estimates are desired.

Value

a dataframe containing the user inputted ENS_id column and the variance estimates for those ENS IDs.

Catalysta/vgdat documentation built on May 11, 2019, 7:25 p.m.