make.example.data: Make an example RNA-seq data.

In CenterForStatistics-UGent/PIMseq: PIM for testing differential expression in single cell RNA-seq data

Make an example RNA-seq data.

Description

Make an example RNA-seq data.

Usage

make.example.data(n.gene = 2000, n.sample = 30, n.group = 2,
  n.batch = 3, p.DEgenes = 0.2, common.BCV = 0.25, type = "bulk")

Arguments

n.gene	number of genes.
n.sample	number of samples/cells.
n.group	number of biological group.
n.batch	number of batchs.
p.DEgenes	fraction of genes with DE between simulated groups
common.BCV	common biological coefficient of variation
type	type gene expression data, either bulk RNA-seq (type="bulk") or single cell RNA-seq (type="sc")

Value

a SingleCellExperiment object.

Examples

make.example.data()
 

CenterForStatistics-UGent/PIMseq documentation built on Jan. 15, 2024, 3:49 a.m.