Files in CenterForStatistics-UGent/xnet

Two-Step Kernel Ridge Regression for Network Predictions

.Rbuildignore

.covrignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

NEWS.md R/Class_linearFilter.R R/Class_permtest.R R/Class_tskrr.R R/Class_tskrrHeterogeneous.R R/Class_tskrrHomogeneous.R R/Class_tskrrImpute.R R/Class_tskrrImputeHeterogeneous.R R/Class_tskrrImputeHomogeneous.R R/Class_tskrrTune.R R/Class_tskrrTuneHeterogeneous.R R/Class_tskrrTuneHomogeneous.R R/all_generics.R R/as_tuned.R R/create_grid.R R/data_drugtarget.R R/data_proteinInteraction.R R/dim.R R/eigen2hat.R R/fitted.R R/get_loo_fun.R R/getlooInternal.R R/getters_linearFilter.R R/getters_permtest.R R/getters_tskrr.R R/getters_tskrrImpute.R R/getters_tskrrTune.R R/hat.R R/impute_tskrr.R R/impute_tskrr.fit.R R/internal_helpers.R R/is_symmetric.R R/labels.R R/linear_filter.R R/loo.R R/looInternal.R R/loss.R R/loss_functions.R R/match_labels.R R/permtest.R R/plot.tskrr.R R/plot_grid.R R/predict.R R/prepare_lambdas.R R/residuals.R R/test_input.R R/test_symmetry.R R/tskrr.R R/tskrr.fit.R R/tune.R R/update.R R/valid_dimensions.R R/valid_labels.R R/weights.R R/xnet-package.R README.md

codecov.yml

data/drugtarget.rda

data/proteinInteraction.rda

docs/_config.yml

docs/index.md

docs/static/images/xnet_logo.png

docs/static/images/xnet_logo.svg

inst/CITATION

inst/testdata/testdata.rda

inst/testdata/testdataH.rda

logo/xnet_logo.png

logo/xnet_logo.svg

man/as_tuned.Rd man/create_grid.Rd man/dim-tskrr-method.Rd man/drugTargetInteraction.Rd man/eigen2hat.Rd man/fitted.Rd man/get_loo_fun.Rd man/getters-permtest.Rd man/getters-tskrr.Rd man/getters-tskrrImpute.Rd man/getters-tskrrTune.Rd man/getters_linearFilter.Rd man/hat.Rd man/impute_tskrr.Rd man/impute_tskrr.fit.Rd man/is_symmetric.Rd man/labels.Rd man/linearFilter-class.Rd man/linear_filter.Rd man/loo.Rd man/looInternal.Rd man/loss.Rd man/loss_functions.Rd man/match_labels.Rd man/permtest-class.Rd man/permtest.Rd man/plot.tskrr.Rd man/plot_grid.Rd man/predict.Rd man/proteinInteraction.Rd man/residuals.tskrr.Rd man/test_symmetry.Rd man/tskrr-class.Rd man/tskrr.Rd man/tskrr.fit.Rd man/tskrrHeterogeneous-class.Rd man/tskrrHomogeneous-class.Rd man/tskrrImpute-class.Rd man/tskrrImputeHeterogeneous-class.Rd man/tskrrImputeHomogeneous-class.Rd man/tskrrTune-class.Rd man/tskrrTuneHeterogeneous-class.Rd man/tskrrTuneHomogeneous-class.Rd man/tune.Rd man/update.Rd man/valid_dimensions.Rd man/valid_labels.Rd man/weights.Rd man/xnet-package.Rd

pre-commit

tests/testthat.R tests/testthat/test_getters.R tests/testthat/test_helperfunctions.R tests/testthat/test_heterogeneous_calculations.R tests/testthat/test_heterogeneous_tune.R tests/testthat/test_homogeneous_calculations.R tests/testthat/test_homogeneous_tune.R tests/testthat/test_impute.R tests/testthat/test_linearFilter_calculations.R tests/testthat/test_plots.R tests/testthat/test_shortcuts.R vignettes/Preparation_example_data.Rmd vignettes/xnet_ClassStructure.Rmd vignettes/xnet_ShortIntroduction.Rmd

xnet.Rproj

xnet_JSSPaper/CVsettings.pdf xnet_JSSPaper/ClassInheritance.pdf

xnet_JSSPaper/ClassInheritance.svg

xnet_JSSPaper/Fig_settings.png

xnet_JSSPaper/imputation.pdf

xnet_JSSPaper/jss.bst

xnet_JSSPaper/jss.cls

xnet_JSSPaper/jsslogo.jpg

xnet_JSSPaper/nulldistr.pdf xnet_JSSPaper/permute.pdf

xnet_JSSPaper/refs.bib

xnet_JSSPaper/refs_old.bib

xnet_JSSPaper/xnet_JSSPaper.R xnet_JSSPaper/xnet_JSSPaper.Rmd xnet_JSSPaper/xnet_JSSPaper_old.Rmd

CenterForStatistics-UGent/xnet documentation built on June 4, 2021, 4:52 p.m.