plotHypervolumes3D: PLOT 3D HYPERVOLUMES WITH ORDINATION LOADINGS AND POST-HOC...
In CeresBarros/ToolsCB: Ceres's Useful R Functions

plotHypervolumes3D

R Documentation

PLOT 3D HYPERVOLUMES WITH ORDINATION LOADINGS AND POST-HOC FITTED VECTORS

Description

Plots two 3D hypervolumes that are based on ordination scores, showing variable loadings and vectors fitted post-hoc to the ordination

Usage

plotHypervolumes3D(
  HVlist,
  loadings_coords = NULL,
  PHvect_coords = NULL,
  loadings_labels = NULL,
  PHvect_labels = NULL,
  loadings_col = "grey20",
  cex.label = 1,
  lwd = 1,
  PHvect_col = "darkgreen",
  ...
)

Arguments

`HVlist`	a `HypervolumeList`
`loadings_coords`	a data.table or data.frame of ordination factor loadings for the 3 axes to be plotted
`PHvect_coords`	a data.table or data.frame of post-hoc fitted vectors loadings for the 3 axes to be plotted
`loadings_labels`	character vector of labels for each ordination factor. Defaults to `row.names(loadings_coords)`
`PHvect_labels`	character vector of labels for each post-hoc fitted vector. Defaults to `row.names(PHvect_coords)`
`loadings_col`	a colour for ordination factor arrows and labels.
`cex.label`	passed to `basicPlotteR::addTextLabels`
`lwd`	passed to `scatterplot3d::scatterplot3d`
`PHvect_col`	a colour for post-hoc fitted vector arrows and labels.
`...`	arguments passed to `.plot.HypervolumeListEdited`