Files in CharlesJB/ENCODExplorer
A compilation of ENCODE metadata
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/ENCODESummary.R
R/ENCODExplorer.R
R/GenomicOverlaps.R
R/createDesign.R
R/demo.R
R/download.R
R/fuzzySearch.R
R/prepare_data.R
R/query.R
R/rest_api.R
R/shiny_encode.R
R/summaryBuilders.R
README.md
inst/extdata/ABC_df_lab.rda
inst/extdata/ABC_list_char.rda
inst/extdata/ABC_subset.rda
inst/extdata/BRCA.rda
inst/extdata/a549_ref.rda
inst/extdata/dataFrame_integer.rda
inst/extdata/encode_df_demo.csv
inst/extdata/test_encode_ds.rda
inst/extdata/test_encode_exp.rda
inst/extdata/test_mouse_donor_df.rda
inst/extdata/test_rest_query_file.rda
inst/extdata/test_rest_search_dataset.rda
inst/extdata/test_rest_search_experiment.rda
inst/extdata/test_rest_search_file.rda
inst/extdata/test_small_encode_df.rda
inst/extdata/unitTest_df.rda
inst/shiny/server.R
inst/shiny/ui.R
inst/unitTests/Makefile
inst/unitTests/local_test_extract_table.R
inst/unitTests/local_test_getDatasetDetails.R
inst/unitTests/local_test_getExperimentDetails.R
inst/unitTests/local_test_getFileDetails.R
inst/unitTests/local_test_getFileId.R
inst/unitTests/local_test_query_transform.R
inst/unitTests/test_createDesign.R
inst/unitTests/test_download.R
inst/unitTests/test_fuzzySearch.R
inst/unitTests/test_query.R
inst/unitTests/test_search.R
inst/unitTests/test_summary.R
man/ENCODEBindingConsensus-class.Rd
man/ENCODEExpressionSummary-class.Rd
man/ENCODESummary-class.Rd
man/ENCODExplorer.Rd
man/GenomicOverlaps-class.Rd
man/GenomicOverlaps.Rd
man/buildConsensusPeaks.Rd
man/buildExpressionSummary.Rd
man/choose_interactive_value.Rd
man/combined_regions-GenomicOverlaps-method.Rd
man/combined_regions-set-GenomicOverlaps-GRanges-method.Rd
man/consensus_indices.Rd
man/consensus_regions.Rd
man/createDesign.Rd
man/downloadEncode.Rd
man/download_dt_file.Rd
man/download_single_file.Rd
man/fuzzySearch.Rd
man/get_encode_df.Rd
man/get_encode_df_demo.Rd
man/get_encode_df_full.Rd
man/initial_regions-GenomicOverlaps-method.Rd
man/intersect_indices.Rd
man/intersect_matrix.Rd
man/intersect_regions.Rd
man/length-GenomicOverlaps-method.Rd
man/names-GenomicOverlaps-method.Rd
man/names-set-GenomicOverlaps-character-method.Rd
man/pairwise_overlap.Rd
man/queryConsensusPeaks.Rd
man/queryEncode.Rd
man/queryEncodeGeneric.Rd
man/queryExpressionGeneric.Rd
man/queryGeneExpression.Rd
man/queryTranscriptExpression.Rd
man/searchEncode.Rd
man/searchToquery.Rd
man/shinyEncode.Rd
man/split_by_metadata.Rd
man/union_indices.Rd
man/union_regions.Rd
tests/runTests.R
vignettes/ENCODExplorer.Rmd
vignettes/img/query_mcf7.png
vignettes/img/search_a549.png
vignettes/img/shiny1.png
vignettes/img/shiny2.png
vignettes/img/wideDesign.png
