README.md
In CharlesJB/GenomicFormatExamples: A collection of genomic file foramat demos
GenomicFormatExamples
This package contains small examples of various genomic file formats for demonstration purpose.
Format currently available:
bed
narrowPeak
* broadPeak
The demo.narrowPeak is the first 1000 lines from the E003-H3K27ac.narrowPeak.gz file[1]. The demo.broadPeak was generated using the first 9 columns of demo.narrowPeak and the demo.bed file using the first 6 columns.
Installation
require(devtools)
install_github("charlesjb/GenomicFormatExamples")
Usage
To get the path to each demo file:
get_demo_file(format = "bed")
get_demo_file(format = "narrowPeak")
get_demo_file(format = "broadPeak")
[1] Roadmap Epigenomic Consortium et al, 2015
CharlesJB/GenomicFormatExamples documentation built on May 6, 2019, 9:58 a.m.
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GenomicFormatExamples
This package contains small examples of various genomic file formats for demonstration purpose.
Format currently available: bed narrowPeak * broadPeak
The demo.narrowPeak is the first 1000 lines from the E003-H3K27ac.narrowPeak.gz file[1]. The demo.broadPeak was generated using the first 9 columns of demo.narrowPeak and the demo.bed file using the first 6 columns.
Installation
require(devtools)
install_github("charlesjb/GenomicFormatExamples")
Usage
To get the path to each demo file:
get_demo_file(format = "bed")
get_demo_file(format = "narrowPeak")
get_demo_file(format = "broadPeak")
[1] Roadmap Epigenomic Consortium et al, 2015
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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