import_bedgraphs: Import bedgraph files
In CharlesJB/hmwrap: Wrapper Functions for ChIP-Seq Heatmaps
Description
Usage
Arguments
Value
Examples
Description
Import bedgraph files
Usage
1
2
import_bedgraphs(filenames, filter_negative_coverages = TRUE,
keep_standard_chromosomes = TRUE, genome = NULL)
Arguments
filenames
Paths to the bedGraph files.
filter_negative_coverages
Convert negative coverage values to 0? (Default: TRUE)
keep_standard_chromosomes
Remove alternative chromosomes? (Default: TRUE)
Value
A list of GRanges (one element per file).
Examples
1
2
filenames <- get_demo_bedGraph_files()
cov <- import_bedgraphs(filenames)
CharlesJB/hmwrap documentation built on March 19, 2018, 4:08 a.m.
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Description Usage Arguments Value Examples
Description
Import bedgraph files
Usage
1 2 | import_bedgraphs(filenames, filter_negative_coverages = TRUE,
keep_standard_chromosomes = TRUE, genome = NULL)
|
Arguments
filenames |
Paths to the bedGraph files. |
filter_negative_coverages |
Convert negative coverage values to 0? (Default: TRUE) |
keep_standard_chromosomes |
Remove alternative chromosomes? (Default: TRUE) |
Value
A list of GRanges (one element per file).
Examples
1 2 | filenames <- get_demo_bedGraph_files()
cov <- import_bedgraphs(filenames)
|
CharlesJB/hmwrap documentation built on March 19, 2018, 4:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
As an Amazon Associate I earn from qualifying purchases.
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