get_miranda: Prepare miRanda object

In CharlesJB/mm10.mirna.annotations: A collection of miRNA annotations

Description

This function will download the mm10 miRanda database and convert it into GRanges format.

Usage

get_miranda(filename = NULL)

Arguments

filename

The path to the miRanda download database in .txt format. If NULL, the database will be downloaded. Default: NULL

Details

Requires an internet connection unless a filename corresponding to the downloaded database is provided.

By default, the "Good mirSVR score, Conserved miRNA" version of the database is downloaded from the "August 2010 Release Downloads" section. See: http://www.microrna.org/microrna/getDownloads.do

Value

A GRanges object corresponding to the mm10 miRanda database.

Examples

## Not run: 
  miranda_gr <- miranda()

## End(Not run)

CharlesJB/mm10.mirna.annotations documentation built on May 6, 2019, 9:58 a.m.