CharlesJB/rTANDEM: Encapsulate X!Tandem in R.
This package encapsulate X!Tandem in R. In its most basic functionality, this package allows to call tandem(input) from R, just as tandem.exe /path/to/input.xml would be used to run X!Tandem from the command line. Classes are also provided for taxonomy and parameters objects and methods are provided to convert xml files to R objects and vice versa. This package is the first step in an attempt to provide a reliable worflow for proteomics analysis in R.
Getting started
Browse package contents
Package details |
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| Author | Frederic Fournier <frederic.fournier@crchuq.ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Rene Paradis <rene.paradis@genome.ulaval.ca>, Arnaud Droit <arnaud.droit@crchuq.ulaval.ca> |
| Bioconductor views | MassSpectrometry Proteomics |
| Maintainer | Frederic Fournier <frederic.fournier@crchuq.ulaval.ca> |
| License | Artistic-1.0 | file LICENSE |
| Version | 1.1.4 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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