support: Return the support for gene regulation models

In CharlotteJana/pdmppoly: Moment Approximation for Polynomial PDMPs

Description

This package contains multiple PDMPs that simulate gene regulation mechanisms. They can be loaded with data(model) where model is one of the following:

• genePdmpK: gene regulation with constant activation

• genePdmpK2: gene regulation with constant activation, transcription and translation are modeled seperately

• genePdmpF: gene regulation with positive feedback

• genePdmpBF: gene regulation with positive feedback and basal transcription rate

• genePdmpKF: gene regulation with constant activation and positive feedback

• toggleSwitch: toggle switch for two genes

The distribution of each of these models has a compact support (see References for further details). Method getSupport returns a list with two data.frames containing the lower and upper bounds of the support. They are time-depend and are given for every variable of the model seperately.

Usage

getSupport(model)

Arguments

model

Object of class pdmpModel or polyPdmp. This has to be one of the previous mentioned models.

Value

A list with two entries named 'lower' and 'upper'. Both are data.frames containing the values of the lower / upper bound for each variable of the PDMP and each time value given in times(model).

Examples

data(genePolyT)
getSupport(genePolyT)

CharlotteJana/pdmppoly documentation built on Sept. 4, 2019, 4:40 p.m.