designGroupSpecificPrimers: Design group-specific primers

In Chebuu/Design-Group-Specific-Primers:

Description

Design group-specific primers

Usage

designGroupSpecificPrimers(
  fasta,
  groups,
  dbConn,
  identifier = "GroupSpecIdentifier"
)

Arguments

fasta	A connection object or a character string specifying the file path to the file containing the sequences, an XStringSet object if type is XStringSet, or a QualityScaledXStringSet object if type is QualityScaledXStringSet. Files compressed with gzip, bzip2, xz, or lzma compression are automatically detected and decompressed during import. Full URL paths (e.g., "http://" or "ftp://") to uncompressed text files or gzip compressed text files can also be used.
groups	Data frame containing information to be added to the dbFile.
dbConn	A SQLite connection object or a character string specifying the path to the database file.
identifier	Character string used to narrow the search results to those matching a specific identifier. Determines the target group(s) for which primers will be designed. If "" then all identifiers are selected.

Chebuu/Design-Group-Specific-Primers documentation built on Aug. 17, 2020, 1:29 a.m.