Files in Chebuu/fastalign

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

R/bspairwise.R R/clustalw.R R/decipher.R R/fastautil.R R/ggmsaReport.R R/launchApp.R R/mutannotate.R R/reverseTranslate.R R/sysdata.R

R/sysdata.rda

R/uniprotutil.R R/xstringutil.R R/zirpelutil.R README.md Rplot.pdf alignment.pdf

alignment.tex

data/AAStringSetGlobalPairwiseAlignment.rda

data/AA_CATEGORIES.rda

data/AA_PROPERTIES.rda

data/AA_Q33DQ2.rda

data/AA_Q8GTB6.rda

data/CANSAT_CODONS.rda

data/CANSAT_GENETIC_CODE.rda

data/Z18_CBDAS.rda

data/Z18_THCAS.rda

data/cbdasaa.rda

data/thcasaa.rda

fastalign.Rproj

inst/app/app.R inst/app/server/events.R inst/app/server/static.R inst/app/ui/components/mpa/mainPanel.R inst/app/ui/components/mpa/sidebarPanel.R inst/app/ui/components/msa/mainPanel.R inst/app/ui/components/msa/sidebarPanel.R inst/app/ui/components/sanger/mainPanel.R inst/app/ui/components/sanger/sidebarPanel.R inst/app/ui/tooltips/tooltips.R

inst/app/www/css/style.css

inst/extdata/refseqs/cbdas/uniprot/CBDAS.fasta

inst/extdata/refseqs/thcas/uniprot/THCAS.fasta

inst/extdata/z18/alignments/Alignment-A6P6V9_3vte-homology-model.afasta

inst/extdata/z18/alignments/Alignment-BLASTp-3ZNM3GD1016-A6P6V9_Y484X.txt

inst/extdata/z18/alignments/Alignment-BLASTp-3ZPD70S1016-Q8GTB6_Y484X.txt

inst/extdata/z18/alignments/Alignment-Q8GTB6_A6P6V9-BBE_domain.clustal_num.txt

inst/extdata/z18/alignments/Alignment-Q8GTB6_A6P6V9.clustal_num.txt

inst/extdata/z18/alignments/Distance-A6P6V9_3VTE-homology-model.eps

inst/extdata/z18/alignments/img/Alignment-A6P6V9_3VTE-5e037856c4494f5a9370f395.png

inst/extdata/z18/constants/aa-categories.csv

inst/extdata/z18/constants/aa-properties.csv

inst/extdata/z18/fasta/A6P6V9.fasta

inst/extdata/z18/fasta/Q8GTB6.fasta

inst/extdata/z18/fasta/Q8GTB6_A6P6V9-BBE_domain.fasta

inst/extdata/z18/mutants/grouped_mutation_activities-zirpel2018.csv

inst/extdata/z18/mutants/mutation_activities-zirpel2018.csv

inst/extdata/z18/mutants/nonsense_activities-zirpel2018.csv

man/hello.Rd tests/testthat.R tests/testthat/.test-ggmsaReport.R tests/testthat/.test-launchApp.R tests/testthat/test-clustalw.R tests/testthat/test-decipher.R tests/testthat/test-express.R tests/testthat/test-ggmsaReport.R tests/testthat/test-launchApp.R tests/testthat/test-snpOntologies.R tests/testthat/test-tipletPermutations.R

vignettes/.gitignore

vignettes/Manuscript.Rmd vignettes/Pairwise-Alignments.Rmd

Chebuu/fastalign documentation built on July 19, 2020, 8:39 p.m.