API for ChenMengjie/SynthEx
A synthetic normal approach to call CNAs from sequencing data.
| Global functions | |
|---|---|
| .bic.rss | Source code |
| .chr.tosegment | Source code |
| .getSegment | Source code |
| .larsCBS | Source code |
| .tosegment | Source code |
| CallWholeGenomeDoubling | Source code |
| Lookup | Source code |
| SynthExPipeline | Source code |
| SynthExUserGuide | Source code |
| SynthExcorrectBias | Source code |
| WGS_calratio | Source code |
| WGS_normalization | Source code |
| calratioWGS | Source code |
| chromosomeView | Source code |
| correctBias | Source code |
| correctBypurity | Source code |
| createBins | Source code |
| createCentromereBins | Source code |
| createSegments | Source code |
| createTargetBins | Source code |
| create_synthetic_library | Source code |
| create_synthetic_normal | Source code |
| denoise | Source code |
| groupCNplots | Source code |
| larsCBSsegment | Source code |
| merge_synthetic_library | Source code |
| normalization | Source code |
| purityEstimate | Source code |
| singleCNreport | Source code |
| synthetic_WGS_calratio | Source code |
| synthetic_correctBias_allpossibility | Source code |
| synthetic_correctBias_allsamples | Source code |
| synthetic_correctBias_nearsamples | Source code |
| synthetic_nearsamples_WGS_calratio | Source code |
