A synthetic normal approach to call CNAs from sequencing data.

Global functions | |
---|---|

CallWholeGenomeDoubling | Source code |

Lookup | Source code |

SynthExPipeline | Source code |

SynthExUserGuide | Source code |

SynthExcorrectBias | Source code |

WGS_calratio | Source code |

WGS_normalization | Source code |

bic.rss | Source code |

calratioWGS | Source code |

chr.tosegment | Source code |

chromosomeView | Source code |

correctBias | Source code |

correctBypurity | Source code |

createBins | Source code |

createCentromereBins | Source code |

createSegments | Source code |

createTargetBins | Source code |

create_synthetic_library | Source code |

create_synthetic_normal | Source code |

denoise | Source code |

groupCNplots | Source code |

hello | Man page |

larsCBS | Source code |

larsCBSsegment | Source code |

merge_synthetic_library | Source code |

normalization | Source code |

purityEstimate | Source code |

selection.default | Source code |

singleCNreport | Source code |

synthetic_WGS_calratio | Source code |

synthetic_correctBias_allpossibility | Source code |

synthetic_correctBias_allsamples | Source code |

synthetic_correctBias_nearsamples | Source code |

synthetic_nearsamples_WGS_calratio | Source code |

tosegment | Source code |

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