Man pages for ChenWeiyan/LandSCENT
Landscape Single Cell Entropy
| CCAT | Correlation of Connectome And Transcriptome |
| CompSRana | Computes the signaling entropy of given gene expression... |
| DoDiffusionMap | Construct diffusion map and select root cell |
| DoIntegPPI | Integration of gene expression matrix and PPI network |
| DoLandSCENT | Runs the LandSCENT algorithm |
| Example.m | Normalized example scRNA-seq data matrix |
| InferLandmark | Infer co-expression landmarks from cells' SR values |
| InferPotency | Infer Distinct potency states from cells' SR values |
| LandSCENT-package | Landscape Single Cell Entropy |
| net13Jun12.m | Human protein-protein interaction network 13Jun12 |
| net17Jan16.m | Human protein-protein interaction network 17Jan16 |
| phenoExample.v | Phenotype information of the example scRNA-seq data |
| phenoscChu.v | Phenotype information for Chu et al. scRNA-seq data |
| Plot_CellSR | Plot Cell density with SR values |
| Plot_DiffusionMap | Visualize diffusion map |
| Plot_LandSR | Plot Landscape with potency states |
| potS.v | Potency states for example plot scRNA-seq data |
| rawExample.m | Raw example scRNA-seq data matrix |
| SR4.v | SR values for example plot scRNA-seq data |
| SR.v | SR values for example scRNA-seq data |
| tsne.o | Reduced dimension matrix for example plot scRNA-seq data |
