phenoscChu.v: Phenotype information for Chu et al. scRNA-seq data

In ChenWeiyan/LandSCENT: Landscape Single Cell Entropy

Description

Phenotype information for the whole scRNA-seq data matrix from Chu et al. 2016.

Usage

data(phenoscChu.v)

Format

A character vector includes 1018 elements

Details

• hESC : human embryonic stem cells(n=374)

• NPC : ectoderm progenitor(n=173)

• DEC : endoderm progenitor(n=138)

• EC : mesoderm progenitor cells(n=105)

• HFF : human foreskin fibroblasts(n=159)

• TB : trophoblasts(n=69)

References

Teschendorff AE, Tariq Enver. Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome. Nature communications 8 (2017): 15599. doi: 10.1038/ncomms15599.

Chu Li-Fang, Ning Leng, Jue Zhang, Zhonggang Hou, Daniel Mamott, David T. Vereide, Jeea Choi, Christina Kendziorski, Ron Stewart and James A. Thomson Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Genome biology 17.1 (2016): 173. doi: 10.1186/s13059-016-1033-x.

ChenWeiyan/LandSCENT documentation built on Aug. 28, 2020, 9:55 p.m.