MetaCyc_pathway_map: The MetaCyc_pathway_map data
In ChiLiubio/file2meco: Transform Files to 'microtable' Object with 'microeco' Package
MetaCyc_pathway_map R Documentation
The MetaCyc_pathway_map data
Description
The MetaCyc_pathway_map data is a manually curated hierarchical structure data of 'MetaCyc' pathways.
It is used for parsing the 'HUMAaN' metagenomic abundance table associated with 'MetaCyc' database.
Currently, only superclass 1, 2 and the pathway are used in this data.
Some metabolic pathways may have multiple classification informations at specific levels,
which are connected here with the symbol "&&".
Therefore, when filtering in this table with the name of a pathway, please use regular expressions instead of direct filtering operations.
Usage
data(MetaCyc_pathway_map)
ChiLiubio/file2meco documentation built on April 14, 2025, 8:28 a.m.
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| MetaCyc_pathway_map | R Documentation |
The MetaCyc_pathway_map data
Description
The MetaCyc_pathway_map data is a manually curated hierarchical structure data of 'MetaCyc' pathways. It is used for parsing the 'HUMAaN' metagenomic abundance table associated with 'MetaCyc' database. Currently, only superclass 1, 2 and the pathway are used in this data. Some metabolic pathways may have multiple classification informations at specific levels, which are connected here with the symbol "&&". Therefore, when filtering in this table with the name of a pathway, please use regular expressions instead of direct filtering operations.
Usage
data(MetaCyc_pathway_map)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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