concor.trees: Analyze Concordances on Trees with All Groupings
In Chien-Hsun/rePhylo: Re-investigating and Improving Phylogenies

Description Usage Arguments See Also Examples

An internal function of backboneBP. To summarize the concordances with all groupings of each of trees, and returns trees that meets all groupings to the main analysis of backboneBP.

1	concor.trees(trees, taxa, level = NULL)

`trees`	a list of objects of class "`phylo`". A list of test trees such as single gene trees.
`taxa`	a `data.frame` with tips and groupings. The first column must be the names of all tips in `trees`. Other columns specify the groupings.
`level`	a character specifying the level used as grouping. Should be one of the column names of `taxa`. Defaults as `NULL` and use the second column of `taxa`.

backboneBP

## Not run: 
data(Brassidata)
trees <- Brassidata$trees
taxa <- Brassidata$taxaTable
uconcort <- concor.trees(trees, taxa, level = 2)

## End(Not run)