rmd: imputation by robust matrix decomposition

In ChongC1990/scRMD: scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition

Description

imputation by robust matrix decomposition

Usage

rmd(Y, tau = NULL, lambda = NULL, initL = NULL, initS = NULL,
  initLambda = NULL, maxiter = 100, abstol = 0.001, reltol = 0.001,
  rho = 1, overrelax = 1.5, candidate = 0.05, econ = 1)

Arguments

Y	A single cell RNA data matrix; rows representing cells.
tau	Tuning parameter to penalize the sparsity of S;
lambda	Tuning parameter to penalize the row rank of L;
initL	The initionlization of L;
initS	The initionlization of S;
initLambda	The initionlization of Lambda;
maxiter	maxmium iteration of algorithm;
candidate	the cutoff for candidate drop out;

Author(s)

Chong Chen, [e-mail]

ChongC1990/scRMD documentation built on May 27, 2019, 4:05 a.m.