analyze | Correction of Genomes in R |
analyze_old | Correction of Genomes in R |
assoc_wrapper | Gen Phen to Df in preparation for Lm |
calculate_was | Takes gen file and calculates weighted allele scores (WAS) |
causal.snps | Function for obtaining a vector of causal SNPs. |
correct | Correct strata by group |
fake.snps | Create a vector of fake non-sense SNPs |
fdr | Calculates FDR given a data frame |
gen2r | Oxford style genotype conversion |
init | Initialize a testing environment |
ld_cor | LD True Postiive Thresholding function |
phen | Phenotype Calculation |
rand | Random Number Generator |
rand0 | Delta Generator Function |
rebuild | Convenience function for recompilling Rcpp and reloading... |
SE_mutate | Automated standard evaluation of mutate with in operator. |
sim.gen | Haplotpe Simulation Function |
stratify | Create strata |
sub_job | Submission Convenience function |
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