Description Usage Arguments Value
Software for the Examination of Multiple Correction Methodologies in Accurate Genomic Environments
1 2 3 4 5 6 | analyze(i = double(), j = double(), mode = "default",
path.base = "/scratch/hpc2862/CAMH/perm_container/container_",
summary.file = "/scratch/hpc2862/CAMH/perm_container/snp_summary2.out",
output = "~/repos/coR-ge/data/test_run2.txt", test = TRUE, safe = TRUE,
local = FALSE, h2 = 0.45, pc = 0.5, pnc = 0.5, nc = 1000,
gen = NULL, summary = summary, maf = FALSE, maf_range = NULL)
|
i |
i index. |
j |
j index. |
path.base |
Base of the path. |
summary.file |
Path to summary file. |
output |
Output stream to write to. |
test |
testing (only read one gen file) |
safe |
Don't delete files |
h2 |
Proportion of heritability explained by causal SNPS |
pc |
Proportion of causal SNPs in the second strata |
pnc |
Proportion of noncausal SNPs in the second strata |
nc |
Number of causal SNPs |
gen |
Gen matrix if local |
summary |
Summary file if preread |
maf |
Maf or no |
maf_range |
MAF range |
Flat file at specified path.
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