domainEmergence: find emergence times for a set of communities

In ChrisTrisos/githubforalex: Calculate species emergence from climate conditions in their current range

Usage

domainEmergence(domain, rangeData, specT, tempPostMat, printProgress = TRUE,
  permYearCut, method = "Mora", runLength, prob)

Arguments

domain	Contains the cell ids (WorldID) we want to explore - we could just use a vector these rather than a big dataframe.......
rangeData	Dataframe containing species names (Tip_Label) and cell ids (WorldID)
specT	Dataframe containing species names (Tip_Label) and max T values
permYearCut	The number of years before the end of the projection for defining permanent emergence i.e if the projection runs to 2300 and permYearCut = 10, then all years past 2290 mus be in an emergent state
futTs	The future temperatures in the cell
yearsFut	The years for which we have future temperature data
tempFutMat	Matrix containing future temperature values for each cell in domain

Details

See Examples.

Author(s)

Alex Pigot <[e-mail]>, Cory Merow

ChrisTrisos/githubforalex documentation built on May 28, 2019, 12:17 p.m.