Man pages for ChrispinChaguza/RCandy
RCandy: an R package for rapid visualisation of homologous recombination events in bacterial genomes
| count.rec.events.per.base | Count number of overlapping recombination events at each... |
| count.rec.events.per.genome | Count number of overlapping recombination events at each... |
| is.color | Check if string is a valid colour name |
| load.genome.GFF | This function loads a reference genome file in GFF format. |
| load.gubbins.GFF | Read recombination events from the output GFF file from... |
| load.taxon.metadata | Function to read and process taxon metadata file |
| quote-RCandy-quote | Gubbins recombination data |
| RCandyVis | Draw and annotate phylogenetic tree with taxon metadata, and... |
| read.tree.file | Function to read phylogenetic tree in Newick file |
| show.blank.plot | Generate a blank plot |
| show.genome.annotation.plot | Draw genome annotation features |
