load.genome.GFF: This function loads a reference genome file in GFF format.

In ChrispinChaguza/RCandy: RCandy: an R package for rapid visualisation of homologous recombination events in bacterial genomes

This function loads a reference genome file in GFF format.

Description

This function loads a reference genome file in GFF format.

Usage

load.genome.GFF(reference.genome)

Arguments

reference.genome

Input file name or data frame in GFF file format.

Value

A data frame.

Author(s)

Chrispin Chaguza, [e-mail]

References

https://github.com/ChrispinChaguza/RCandy

Examples

## Not run: 
Read genome in GFF formatted file, generated usign readseq, and plot the genomic features

ref.genome.gff<-system.file("extdata", "Hungary19A-6.gff", package = "RCandy",mustWork = TRUE)

new.ref.genome<-load.genome.GFF(ref.genome.gff)

## End(Not run)

ChrispinChaguza/RCandy documentation built on June 23, 2022, 1:03 p.m.