DataInfo.link: Exhibit basic data information

In Chunger-Lo/iNEXT.link: Network diversity iNterpolation/Extrapolation Estimation

Description

DataInfo.link: exhibits basic data information

Usage

DataInfo.link(
  data,
  diversity = "TD",
  datatype = "abundance",
  row.tree = NULL,
  col.tree = NULL
)

Arguments

data	a vector/matrix/list of species abundances or incidence frequencies. If datatype = "incidence", then the first entry of the input data must be total number of sampling units, followed by species incidence frequencies.
diversity	a choice of three-level diversity: 'TD' = 'Taxonomic', 'PD' = 'Phylogenetic', and 'FD' = 'Functional' under certain threshold.
datatype	data type of input data: individual-based abundance data (datatype = "abundance") or species by sampling-units incidence matrix (datatype = "incidence_raw").#' @return a data.frame of basic data information including sample size, observed species richness, sample coverage estimate, and the first ten abundance/incidence frequency counts.

Examples

## Not run: 
data(puerto.rico)
DataInfo.link(puerto.rico$data, diversity = 'TD', datatype="abundance")
DataInfo.link(puerto.rico$data, diversity = 'PD', datatype="abundance",
row.tree = puerto.rico$row.tree, col.tree = puerto.rico$col.tree)

## End(Not run)

Chunger-Lo/iNEXT.link documentation built on Dec. 17, 2021, 2:05 p.m.