getFunctionalSpectra: Generate Functional Spectra

In CityUHK-CompBio/DeepCC: DeepCC: a deep learning-based framework for cancer classification

Description

This function generates functional spectra for given gene expressin profiles.

Usage

getFunctionalSpectra(
  eps,
  geneSets = "MSigDBv7",
  scale = T,
  cores = parallel::detectCores() - 2
)

Arguments

eps	a data.frame containing gene expression profiles (each row presents one sample)
cores	a integer indicating cpu cores used in parallel computing (default = all cores -2 )
geneSet	a List containing gene sets (default: MSigDB v6)

Value

a data.frame containing functional spectra

See Also

getFunctionalSpectrum for a single expression profile.

Examples

getFunctionalSpectra(eps)

CityUHK-CompBio/DeepCC documentation built on Dec. 24, 2021, 7:48 a.m.