README.md

In CityUHK-CompBio/nemTar: A method for singlaing network inference from (epi)genetic aberration profiles

nemTar

A method based on graphical model for cancer regulatory network inference and prioritization of potential therapeutic targets

Quick Installation

This package is available under R(>=3.5.0, 3.6.x is preferred).

If you have installed devtools package, you only need to call install_github function in devtools to install nemTar.

Please refer to the following commands to install **nemTar**

install.packages("devtools")

devtools::install_github("CityUHK-CompBio/nemTar", dependencies=TRUE)

Dependency

nemTar requires the following R/Bioconductor packages for its normal function:

• nem (Bioconductor, version 2.60.0 is preferred)
• dplyr(version 0.8.5 is preferred)

Quick Start to Apply nemTar

A toy example on simulated network and two case studies involved in GC and CRC could be found in our vignette.

nemTar also provides a manual to introcuce the main functions in our package.

Getting Help

Should you have any questions about this package, you can either email to the developers listed in the DESCRIPTION part of this package or create an issue in the issue part.

CityUHK-CompBio/nemTar documentation built on March 11, 2021, 6:03 p.m.