resultsModel: Datasets containing Models Fitted by Bariod et al. (in prep.)

In ClementCalenge/tickTF: Infection of Roe Deer Fawns by Ticks from 1992 to 2018 in the Trois-Fontaines Forest

Description

These datasets contain the MCMC iterations corresponding to the various models fitted to describe the infection process of roe deer fawns by ticks in the Trois-Fontaines forest (France).

Usage

data("resultsModel")

data("resultsModel0")

data("resultsModelTemperature")

data("resultsModelDensity")

data("resultsModelHabitat")

Format

All these objects were returned by the function nimbleMCMC from the package nimble (see the vignette of the package).

Details

Each dataset contains the MCMC iterations obtained by fitting one of the models studied by Bariod et al. to the dataset fticks. The vignette of the package describes how these datasets were built. More precisely:

resultsModel contains the results of the fit of the final model (presented in the paper), including the humidity as a variable affecting the infectious detection rate.

resultsModel0 contains the results of the fit of the final model (presented in the paper), but without the humidity as a variable affecting the infectious detection rate.

resultsModel0 contains the results of the fit of the same model as resultsModel, but with the mean temperature as an additional variable affecting the infectious detection rate.

resultsModelDensity contains the results of the fit of the same model as resultsModel, but with the roe deer density of the year of capture as an additional variable affecting the infectious detection rate.

resultsModelHabitat contains the results of the fit of the same model as resultsModel, but with the habitat type of the site of capture as an additional random effect affecting the infectious detection rate.

Source

The original Dataset has been kindly provided by the Office Francais de la Biodiversite:

Office francais de la biodiversite, Direction de la Recherche et de l'Appui Scientifique, Office Francais de la Biodiversite, Birieux, France

References

Bariod L., Said S., Calenge C., Chabot S., Badeaud V. \& Bourgoin G. in prep. Infection of Roe Deer Fawns by Ticks from 1992 to 2018 in the Trois-Fontaines Forest (France).

Examples

## Structure of the dataset
str(resultsModel)

## See the vignette for a description of how these results where
## obtained

ClementCalenge/tickTF documentation built on Dec. 17, 2021, 2:06 p.m.