Man pages for Close-your-eyes/scexpr
Lots of helpers and wrappers to analyze scRNAseq data sets
| cds_dimred_to_seurat | Copy dimension reductions from a cell data set (cds) object... |
| cds_trajectory_to_seurat | Copy a trajectory from a cell data set (cds) object to... |
| cluster_correlation | Find groups (clusters) of cells (single cell transcriptomes)... |
| clustering_volcanos | Title |
| coalesce_join | Coalescing join function which will update NA values in the... |
| col_pal | Color palettes |
| composition_barplot | Plot composition of one category by another |
| convert_gene_identifier | Title |
| feature_correlation | Get features whose expression is correlated or... |
| feature_plot | Plot features of single cell transcriptomes on a dimension... |
| feature_plot_stat | Title |
| fgsea_on_msigdbr | Title |
| freq_pie_chart | Title |
| heatmap_pseudobulk | Title |
| hla_df_from_xml | Prepare a data frame from a xml file containing hla allele... |
| hla_typing | Align reads from (sc)RNAseq to known HLA reference alleles,... |
| hs_mm_ortholog_table | Create an table of ortholog genes between human and mouse |
| prep_SO | Prepare a somewhat standardized Seurat Object for further... |
| qc_diagnostic | Run a bunch of default quality checks on scRNAseq data from... |
| qc_params_meta_cols | Title |
| qc_plot | Quickly plot common qc metrics |
| reads_from_bam | Get reads from a bam file |
| reverse_lognorm | Title |
| row_scale | Title |
| scale_min_max | Title |
| shiny_uis | Title |
| split_mat | Split matrices just like splitting a data frame. |
| volcano_plot | Make a volcano plot comparing the gene expression of selected... |
